= Supplementary material =

Web page http://www.3dbar.org/wiki/barPossumSupplement contains the most recent versions of supplementary materials for the article:

==  ==


== ABSTRACT ==


=== Following supplementary materials are available: ===

{{{#!comment
Materiały udostępnione wraz z artykułem: 
Deformable brain volume reconstruction based on slices stained with Nissl method (volume), (mask) 
Deformable brain volume reconstruction based on slices stained for myelinated fibres (volume) (mask) 

Affinely coregistered individual modalities in stereotaxic coordinates: 
1. Blockface volume in stereotaxic coordinate system (rgb volume) (mask) 
2. Nissl brain volume in stereotaxic coordinate system (rgb volume) 
3. Myelin stain-based volume in stereotaxic coordinates (rgb volume)
4. MRI volume in stereotaxic coordinates (volume) (labels) 
5. Computed microtomography image of the whole skull (volume) 

Deformable coregistration of histology-based reconstructions: 
1. Nissl brain volume nonlineary registered to MRI (rgb volume) 
2. Forward deformation field (Nissl -> MRI) 
3. Inverse deformation field (MRI -> Nissl) 

4. Myelin brain volume nonlineary coregistered to MRI (rgb volume) 
5. Forward deformation field (Myelin -> MRI) 
6. Inverse deformation field (MRI -> Myelin) 

Other resources: 
7. Itk-snap label description file (english) (polish) 
8. Segmentations of the brain available via the 3d Brain Atlas Reconstructor Service.


Resources localized in the stereotaxtic reference system (all volumes are represented at 50um isotropic resolution):

1. Reference MR brain volume (Download, 14MB)
1. Segmentation of the MR brain volume (Download, 0.8MB; labels description)
3. Blockface volume - affine coregistration (Download, 16.4MB)
4. Nissl-stain brain volume:
   a. Affine coregistration (Download, 17.1MB)
   b. Affine and deformable coregistration (Download, 16.8MB)
5. Myelin-stain brain volume:
   a. Affine coregistration (Download, 20.7MB)
   b. Affine and deformable coregistration (Download, 21.7MB)
6. micro-CT skull image (Download, 20.6MB)


Other resources (not localized in stereoraxic reference system):

Affinely coregistered individual modalities in stereotaxic coordinates: 
1. Blockface volume in stereotaxic coordinate system (rgb volume) (mask) 
2. Nissl brain volume in stereotaxic coordinate system (rgb volume) 
3. Myelin stain-based volume in stereotaxic coordinates (rgb volume)
4. MRI volume in stereotaxic coordinates (volume) (labels) 
5. Computed microtomography image of the whole skull (volume) 

Deformable coregistration of histology-based reconstructions: 
1. Nissl brain volume nonlineary registered to MRI (rgb volume) 
2. Forward deformation field (Nissl -> MRI) 
3. Inverse deformation field (MRI -> Nissl) 

4. Myelin brain volume nonlineary coregistered to MRI (rgb volume) 
5. Forward deformation field (Myelin -> MRI) 
6. Inverse deformation field (MRI -> Myelin) 

Other resources: 
7. Itk-snap label description file (english) (polish) 
8. Segmentations of the brain available via the 3d Brain Atlas Reconstructor Service. 
}}}