= Supplementary material =

Web page http://www.3dbar.org/wiki/barPossumSupplement contains the most recent versions of supplementary materials for the article:

==  ==


== ABSTRACT ==


=== Following supplementary materials are available: ===

#!comment {{{#!comment
Resources localized in the stereotaxtic reference system (all volumes are represented at 50um isotropic resolution):

1. Reference MR brain volume (Download, 14MB)
1. Segmentation of the MR brain volume (Download, 0.8MB; labels description)
3. Blockface volume - affine coregistration (Download, 16.4MB)
4. Nissl-stain brain volume:
   a. Affine coregistration (Download, 17.1MB)
   b. Affine and deformable coregistration (Download, 16.8MB)
5. Myelin-stain brain volume:
   a. Affine coregistration (Download, 20.7MB)
   b. Affine and deformable coregistration (Download, 21.7MB)
6. micro-CT skull image (Download, 20.6MB)


Other resources (not localized in stereoraxic reference system):

Affinely coregistered individual modalities in stereotaxic coordinates: 
1. Blockface volume in stereotaxic coordinate system (rgb volume) (mask) 
2. Nissl brain volume in stereotaxic coordinate system (rgb volume) 
3. Myelin stain-based volume in stereotaxic coordinates (rgb volume)
4. MRI volume in stereotaxic coordinates (volume) (labels) 
5. Computed microtomography image of the whole skull (volume) 

Deformable coregistration of histology-based reconstructions: 
1. Nissl brain volume nonlineary registered to MRI (RGB volume, ) 
2. Nissl to MRI deformation field 
3. MRI to Nissl deformation field 

4. Myelin brain volume nonlineary coregistered to MRI ([http://doc.3dbar.org/possum/myelin_warped.nii.gz rgb volume], 18.1MB) 
5. Myelin to MRI deformation field ([http://doc.3dbar.org/possum/myelin_to_mri_warp.nii.gz Download], 264MB)
6. MRI to myelin deformation field ([http://doc.3dbar.org/possum/mri_to_myelin_warp.nii.gz Download], 248MB)

Other resources: 
7. [http://doc.3dbar.org/possum/label_description_polish.txt Itk-snap label description file in polish],
8. [http://www.3dbar.org:8080/getCafInfoPage?cafDatasetName=pos_0.1 Segmentation] available via the [http://www.3dbar.org:8080/ 3d Brain Atlas Reconstructor Service]. 
#!comment }}}