= Supplementary material =

Web page http://www.3dbar.org/wiki/barPossumSupplement contains the most recent versions of supplementary materials for the article:

==  ==


= ABSTRACT =


== Following supplementary materials are available: ==

=== Volumes localized in the stereotaxtic reference system ===

(all volumes are represented at 50um isotropic resolution)

1. Reference MR brain volume ([http://doc.3dbar.org/possum/01/mri_reference_in_srs.nii.gz Download], 14MB)
1. Segmentation of the MR brain volume ([http://doc.3dbar.org/possum/01/segmentation_in_srs.nii.gz Download], 0.8MB; [http://doc.3dbar.org/possum/01/labels.txt labels description])
3. Blockface volume - affinely coregistered with the reference MR ([http://doc.3dbar.org/possum/01/blockface_volume_affine_in_srs.nii.gz Download], 16.4MB)
4. Nissl-stain brain volume:
   a. affinely coregistered ([http://doc.3dbar.org/possum/01/nissl_stain_volume_affine_in_srs.nii.gz Download], 17.1MB)
   b. deformably coregistered with MRI ([http://doc.3dbar.org/possum/01/nissl_stain_volume_deformed_in_srs.nii.gz Download], 16.8MB)
5. Myelin-stain brain volume:
   a. affinely coregistered with MRI ([http://doc.3dbar.org/possum/01/myelin_stain_volume_affine_in_srs.nii.gz Download], 20.7MB)
   b. deformably coregistered with MRI ([http://doc.3dbar.org/possum/01/myelin_stain_volume_deformed_in_srs.nii.gz Download], 21.7MB)
6. micro-CT skull image ([http://doc.3dbar.org/possum/01/micro_ct_in_srs.nii.gz Download], 20.6MB)
7. [http://www.3dbar.org:8080/getCafInfoPage?cafDatasetName=pos_0.1 Segmentation] available via the [http://www.3dbar.org:8080/ 3d Brain Atlas Reconstructor Service]. 


=== Other resources ===

(not localized in stereoraxic reference frame)

1. Nissl-stain brain volume affinely registered to MRI ([http://doc.3dbar.org/possum/02/nissl_affine.nii.gz rgb volume], 18.3MB) 
2. Nissl-stain brain volume nonlineary registered to MRI ([http://doc.3dbar.org/possum/02/nissl_warped.nii.gz rgb volume], 18.1MB) 
3. Nissl to MRI deformation field ([http://doc.3dbar.org/possum/02/nissl_to_mri_warp.nii.gz Download], 202MB)
4. MRI to Nissl deformation field ([http://doc.3dbar.org/possum/02/mri_to_nissl_warp.nii.gz Download], 190MB)

5. Myelin-stain brain volume affinely coregistered to MRI ([http://doc.3dbar.org/possum/02/myelin_warped.nii.gz rgb volume], 22.2MB) 
6. Myelin-stain brain volume nonlineary coregistered to MRI ([http://doc.3dbar.org/possum/02/myelin_warped.nii.gz rgb volume], 23.2MB) 
7. Myelin to MRI deformation field ([http://doc.3dbar.org/possum/02/myelin_to_mri_warp.nii.gz Download], 264MB)
8. MRI to myelin deformation field ([http://doc.3dbar.org/possum/02/mri_to_myelin_warp.nii.gz Download], 248MB)

9. [http://doc.3dbar.org/possum/labels_description_polish.txt Itk-snap label description file in polish],