Supplementary material

Web page http://www.3dbar.org/wiki/barPossumSupplement contains the most recent versions of supplementary materials for the article:

ABSTRACT

Following supplementary materials are available:

#!comment {{{#!comment Resources localized in the stereotaxtic reference system (all volumes are represented at 50um isotropic resolution):

1. Reference MR brain volume (Download, 14MB)
2. Segmentation of the MR brain volume (Download, 0.8MB; labels description)
3. Blockface volume - affine coregistration (Download, 16.4MB)
4. Nissl-stain brain volume:
   1. Affine coregistration (Download, 17.1MB)
   2. Affine and deformable coregistration (Download, 16.8MB)
5. Myelin-stain brain volume:
   1. Affine coregistration (Download, 20.7MB)
   2. Affine and deformable coregistration (Download, 21.7MB)
6. micro-CT skull image (Download, 20.6MB)

Other resources (not localized in stereoraxic reference system):

Affinely coregistered individual modalities in stereotaxic coordinates:

1. Blockface volume in stereotaxic coordinate system (rgb volume) (mask)
2. Nissl brain volume in stereotaxic coordinate system (rgb volume)
3. Myelin stain-based volume in stereotaxic coordinates (rgb volume)
4. MRI volume in stereotaxic coordinates (volume) (labels)
5. Computed microtomography image of the whole skull (volume)

Deformable coregistration of histology-based reconstructions:

1. Nissl brain volume nonlineary registered to MRI (RGB volume, )
2. Nissl to MRI deformation field
3. MRI to Nissl deformation field

4. Myelin brain volume nonlineary coregistered to MRI ( rgb volume, 18.1MB)
5. Myelin to MRI deformation field ( Download, 264MB)
6. MRI to myelin deformation field ( Download, 248MB)

Other resources:

7.  Itk-snap label description file in polish,
8. Segmentation available via the 3d Brain Atlas Reconstructor Service.

#!comment }}}