= Supplementary material =

Web page http://www.3dbar.org/wiki/barPosSupp contains the most recent versions of the supplementary materials for the article:

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= ABSTRACT =

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== The following supplementary materials are available: ==

1. [https://github.com/pmajka/poSSum/ GitHub] repository with the current:
   a. Release branch: https://github.com/pmajka/poSSum/tree/release
   b. Develop branch: https://github.com/pmajka/poSSum/tree/develop
   
   Including installation instruction test and usage examples.

2. [http://youtu.be/j89KxyluiCM Screencast] Showing how to install the framework on a fresh Ubuntu Linux system.

3. Virtual Box [http://doc.3dbar.org/possum/possum_framework_vm.ova Virtual Appliance] (2GB) containing reinstalled Xubuntu 12.04 Linux and ready to use PoSSum Reconstruction Framework installation. See the [https://github.com/pmajka/poSSum/blob/0.9.0-pygmy_glider/README.md readme] file for information how to deploy and use the virtual machine.

4. [http://doc.3dbar.org/possum/reconstruction_of_the_waxholm_space_nissl_image_tutorial.tgz Complete set of calculations] of the 3D reconstruction of the Waxholm Space Mouse Brain Reference based on [https://files.incf.org/publicController.do?folderName=20130129&fileName=7a0e42b96a4a40f7#folder-link/ 312 images] of sections stained with the Nissl method ([http://www.ncbi.nlm.nih.gov/pubmed/20600960 Johnson et. al. 2010]) described in the article.