= 3d Brain Atlas Reconstructor on-line service =

''Supported by an infrastructural grant[[BR]]
from the Polish Ministry of Regional Development[[BR]]
POIG.02.03.00-00-003/09''

[[PageOutline(2-4,,inline)]]

== Available pipelines ==
=== Pipelines related to CAF dataset based on the Waxholm Space mouse atlas, 2010 delineation (whs_0.51) ===
{{{#!th
  [=#whs_0.51-LO '''Low quality pipeline''']
}}}
{{{#!th
  [=#whs_0.51-HQ '''High quality pipeline''']
}}}
{{{#!th
  [=#whs_0.51-Thumbnail '''Thumbnail pipeline''']
}}}
{{{#!th
  [=#whs_0.51-Smooth '''Smooth model pipeline'''] 
}}}
|-
{{{#!td valign=top
  [[Image(whs_0.51_lo_pipeline.png)]]
}}}
{{{#!td valign=top
  [[Image(whs_0.51_hi_pipeline.png)]]
}}}
{{{#!td valign=top
  [[Image(whs_0.51_th_pipeline.png)]] 
}}}
{{{#!td valign=top
  [[Image(whs_0.51_sm_pipeline.png)]] 
}}}

=== Pipelines related to CAF dataset based on the Waxholm Space mouse atlas, 2009 delineation (whs_0.5) ===
{{{#!th
  [=#whs_0.5-LO '''Low quality pipeline'''] 
}}}
{{{#!th
  [=#whs_0.5-HQ '''High quality pipeline'''] 
}}}
{{{#!th
  [=#whs_0.5-Thumbnail '''Thumbnail pipeline'''] 
}}}
{{{#!th
  [=#whs_0.5-Smooth '''Smooth model pipeline'''] 
}}}
|-
{{{#!td valign=top
  [[Image(whs_0.5_lo_pipeline.png)]]
}}}
{{{#!td valign=top
  [[Image(whs_0.5_hi_pipeline.png)]]
}}}
{{{#!td valign=top
  [[Image(whs_0.5_th_pipeline.png)]] 
}}}
{{{#!td valign=top
  [[Image(whs_0.5_sm_pipeline.png)]] 
}}}


=== Pipelines related to CAF dataset based on the !NeuroMaps Macaque Atlas from  SBA template (sba_DB08) ===
{{{#!th
  [=#sba_DB08-LQ '''Low quality pipeline'''] 
}}}
{{{#!th
  [=#sba_DB08-HQ '''High quality pipeline'''] 
}}}
{{{#!th
  [=#sba_DB08-Thumbnail '''Thumbnail pipeline'''] 
}}}
{{{#!th
  [=#sba_DB08-Smooth '''Smooth model pipeline'''] 
}}}
|-
{{{#!td valign=top
  [[Image(sba_DB08-LQ.png)]]
}}}
{{{#!td valign=top
  [[Image(sba_DB08-HQ.png)]]
}}}
{{{#!td valign=top
  [[Image(sba_DB08-Thumbnail.png)]] 
}}}
{{{#!td valign=top
  [[Image(sba_DB08-Smooth.png)]] 
}}}


=== Pipelines related to CAF dataset based on the Rhesus Monkey, Paxinos et al. 2000 from  SBA template (sba_PHT00) ===
{{{#!th
  [=#sba_PHT00-LQ '''Low quality pipeline'''] 
}}}
{{{#!th
  [=#sba_PHT00-HQ '''High quality pipeline'''] 
}}}
{{{#!th
  [=#sba_PHT00-Thumbnail '''Thumbnail pipeline'''] 
}}}
{{{#!th
  [=#sba_PHT00-Smooth '''Smooth model pipeline'''] 
}}}
|-
{{{#!td valign=top
  [[Image(sba_PHT00-LQ.png)]]
}}}
{{{#!td valign=top
  [[Image(sba_PHT00-HQ.png)]]
}}}
{{{#!td valign=top
  [[Image(sba_PHT00-Thumbnail.png)]] 
}}}
{{{#!td valign=top
  [[Image(sba_PHT00-Smooth.png)]] 
}}}

=== Pipelines related to CAF dataset based on the SBA template of Waxholm Space mouse atlas (sba_WHS09) ===
{{{#!th
  [=#sba_WHS09-LQ '''Low quality pipeline'''] 
}}}
{{{#!th
  [=#sba_WHS09-HQ '''High quality pipeline'''] 
}}}
{{{#!th
  [=#sba_WHS09-Thumbnail '''Thumbnail pipeline'''] 
}}}
{{{#!th
  [=#sba_WHS09-Smooth '''Smooth model pipeline'''] 
}}}
|-
{{{#!td valign=top
  [[Image(sba_WHS09-LQ.png)]]
}}}
{{{#!td valign=top
  [[Image(sba_WHS09-HQ.png)]]
}}}
{{{#!td valign=top
  [[Image(sba_WHS09-Thumbnail.png)]] 
}}}
{{{#!td valign=top
  [[Image(sba_WHS09-Smooth.png)]] 
}}}

=== Pipelines related to CAF dataset based on the SBA template of Waxholm Space mouse atlas (sba_WHS10) ===
{{{#!th
  [=#sba_WHS10-LQ '''Low quality pipeline'''] 
}}}
{{{#!th
  [=#sba_WHS10-HQ '''High quality pipeline'''] 
}}}
{{{#!th
  [=#sba_WHS10-Thumbnail '''Thumbnail pipeline'''] 
}}}
{{{#!th
  [=#sba_WHS10-Smooth '''Smooth model pipeline'''] 
}}}
|-
{{{#!td valign=top
  [[Image(sba_WHS10-LQ.png)]]
}}}
{{{#!td valign=top
  [[Image(sba_WHS10-HQ.png)]]
}}}
{{{#!td valign=top
  [[Image(sba_WHS10-Thumbnail.png)]] 
}}}
{{{#!td valign=top
  [[Image(sba_WHS10-Smooth.png)]] 
}}}


=== Pipelines related to CAF dataset based on the SBA: the LPBA40 parcellation, registered to SRI24 space (sba_LPBA40_on_SRI24) ===
{{{#!th
  [=#sba_LPBA40_on_SRI24-LQ '''Low quality pipeline'''] 
}}}
{{{#!th
  [=#sba_LPBA40_on_SRI24-HQ '''High quality pipeline'''] 
}}}
{{{#!th
  [=#sba_LPBA40_on_SRI24-Thumbnail '''Thumbnail pipeline'''] 
}}}
{{{#!th
  [=#sba_LPBA40_on_SRI24-Smooth '''Smooth model pipeline'''] 
}}}
|-
{{{#!td valign=top
  [[Image(sba_LPBA40_on_SRI24-LQ.png)]]
}}}
{{{#!td valign=top
  [[Image(sba_LPBA40_on_SRI24-HQ.png)]]
}}}
{{{#!td valign=top
  [[Image(sba_LPBA40_on_SRI24-Thumbnail.png)]] 
}}}
{{{#!td valign=top
  [[Image(sba_LPBA40_on_SRI24-Smooth.png)]] 
}}}


=== Pipelines related to CAF dataset based on the SBA: Macaque, Regional Map from Kötter and Wanke 2005 (sba_RM_on_F99) ===
{{{#!th
  [=#sba_RM_on_F99-LQ '''Low quality pipeline'''] 
}}}
{{{#!th
  [=#sba_RM_on_F99-HQ '''High quality pipeline'''] 
}}}
{{{#!th
  [=#sba_RM_on_F99-Thumbnail '''Thumbnail pipeline'''] 
}}}
{{{#!th
  [=#sba_RM_on_F99-Smooth '''Smooth model pipeline'''] 
}}}
|-
{{{#!td valign=top
  [[Image(sba_RM_on_F99-LQ.png)]]
}}}
{{{#!td valign=top
  [[Image(sba_RM_on_F99-HQ.png)]]
}}}
{{{#!td valign=top
  [[Image(sba_RM_on_F99-Thumbnail.png)]] 
}}}
{{{#!td valign=top
  [[Image(sba_RM_on_F99-Smooth.png)]] 
}}}


=== Pipelines related to CAF dataset based on the CAF dataset based on volumetric version of Allen Mouse Brain Atlas (aba) ===
{{{#!th
  [=#aba-LQ '''Low quality pipeline'''] 
}}}
{{{#!th
  [=#aba-HQ '''High quality pipeline'''] 
}}}
{{{#!th
  [=#aba-Thumbnail '''Thumbnail pipeline'''] 
}}}
{{{#!th
  [=#aba-Smooth '''Smooth model pipeline'''] 
}}}
|-
{{{#!td valign=top
  [[Image(aba-LQ.png)]]
}}}
{{{#!td valign=top
  [[Image(aba-HQ.png)]]
}}}
{{{#!td valign=top
  [[Image(aba-Thumbnail.png)]] 
}}}
{{{#!td valign=top
  [[Image(aba-Smooth.png)]] 
}}}


=== Other pipelines ===
{{{#!th
  [=#Default '''Default pipeline'''] 
}}}
|-

{{{#!td valign=top
  [[Image(default_pipeline.png)]] 
}}}