3d Brain Atlas Reconstructor on-line service

1. Available services
   1. getCafInfo
   2. getReconstruction
   3. getPreview
   4. getThumbnail
   5. getCafSlide
   6. getAvailableDatasets
2. Available datasets

Available services

getCafInfo

Returns the index file of selected CAF dataset. Index file contains the list of structures available for reconstruction, their hierarchy and the list of slides within the given dataset.

Examples

•  http://service.3dbar.org/getCafInfo?cafDatasetName=whs_0.51
•  http://service.3dbar.org/getCafInfo?cafDatasetName=whs_0.51;listSlides=False;listStructures=False

getReconstruction

Returns a model of a given structure from selected dataset as a zip file containing the reconstruction and a short description.

Examples

•  http://service.3dbar.org/getReconstruction?cafDatasetName=whs_0.51;structureName=thalamus
•  http://service.3dbar.org/getReconstruction?cafDatasetName=whs_0.51;structureName=thalamus;qualityPreset=high;outputFormat=vrml

getPreview

Displays a window allowing to manipulate (rotate, zoom, etc.) lightweight version of the reconstuciton. Note that the web browser has to support  WebGL in order to use this feature.

Examples

•  http://service.3dbar.org/getPreview?cafDatasetName=whs_0.51&structureName=CNS
•  http://service.3dbar.org/getPreview?cafDatasetName=whs_0.5&structureName=Hc
•  http://service.3dbar.org/getPreview?cafDatasetName=sba_DB08&structureName=FBr

getThumbnail

Returns a thumbnail of the reconstruction of a given structure available via getReconstruction in png format.

Examples

•  http://service.3dbar.org/getThumbnail?cafDatasetName=whs_0.51;structureName=corpus-callosum
•  http://service.3dbar.org/getThumbnail?cafDatasetName=whs_0.51;structureName=thalamus
•  http://service.3dbar.org/getThumbnail?cafDatasetName=whs_0.51;structureName=CNS
•  http://service.3dbar.org/getThumbnail?cafDatasetName=sba_DB08;structureName=FL
•  http://service.3dbar.org/getThumbnail?cafDatasetName=sba_DB08;structureName=LV
•  http://service.3dbar.org/getThumbnail?cafDatasetName=sba_PHT00;structureName=Brain

getCafSlide

Returns an SVG image with CAF slide filtered using provided settings.

Examples

•  http://service.3dbar.org/getCafSlide?cafDatasetName=whs_0.51;slideNumber=460
•  http://service.3dbar.org/getCafSlide?cafDatasetName=whs_0.51;slideNumber=460;showMask=True;showLabels=False
•  http://service.3dbar.org/getCafSlide?cafDatasetName=whs_0.51;slideNumber=460;showLabels=False
•  http://service.3dbar.org/getCafSlide?cafDatasetName=sba_DB08;slideNumber=84;structureList=Cx
•  http://service.3dbar.org/getCafSlide?cafDatasetName=sba_DB08;slideNumber=84;structureList=Cx,Th

getAvailableDatasets

Returns an AJAX data describing CAF datasets (atlases) available to the user in the service.

Example

•  http://service.3dbar.org/getAvailableDatasets

Available datasets

• Here? you can find a list of all available CAF datasets.