= Supplementary material =

Web page http://www.3dbar.org/wiki/barServiceSupplement contains the most recent versions of supplementary materials for the article:

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== ABSTRACT ==

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=== Following supplementary materials are available: ===

1. [wiki:barServiceServiceSyntax Documentation of the Application Programming Interface (API)]
2. Tutorials:
   - [wiki:barServiceUserGuideAccesingRecWizzard How to access the Custom Reconstruction Wizard?]
   - [http://www.3dbar.org/wiki/barServiceUserGuideLabeledVolumes How to use labeled volumes available at 3dBAR on-line service website?]
3. Screencasts:
   - [http://www.youtube.com/watch?v=bSzUYO1hWF0&feature=share&list=PL0BA8CA839C7981CB A whole playlist]:
   - [http://youtu.be/bSzUYO1hWF0?hd=1 Selecting an atlas],
   - [http://youtu.be/Nqnm9XE6P9c?hd=1 Displaying atlas details],
   - [http://youtu.be/-ZT7TF-FyYQ?hd=1 Switching the atlas],
   - [http://youtu.be/P3Al20QtDLk?hd=1 Browsing atlas slides],
   - [http://youtu.be/vO4dzBdpWnw?hd=1 3D model preview],
   - [http://youtu.be/wK4995zYJE0?hd=1 Browsing reconstructed models],
   - [http://youtu.be/lb4mdO_H_bc?hd=1 Requesting a custom reconstruction],
   - [http://youtu.be/t75t8s_wUcQ?hd=1 Using the user panel],
   - [http://youtu.be/L4EzPeVomSY?hd=1 Other features of 3D model preview],
   - [http://youtu.be/8vutD0l1iwU?hd=1 Requesting a composite custom reconstruction].
4. [wiki:barServiceTroubleshooting Troubleshooting]

||||||=  Reproducing results from the article  =||
||=  [http://www.3dbar.org/wiki/barServiceUserGuideLabeledVolumes Figure 2]  =||\
||=  [http://www.3dbar.org:8080/getPreview?cafDatasetName=aba2011;structureName=CTX,CNU,BS,CB# Figure 3]  =||\
||=  Figure 4  =||
||  [[Image(figure_itksnap_src_small.jpg)]]  ||  [[Image(figure_live_preview_small.jpg)]]  ||  [[Image(figure_crw_small.jpg)]]  ||
{{{#!td valign=top
[http://www.3dbar.org/wiki/barServiceUserGuideLabeledVolumes Reproducing Figure 2]:\\
Labeled volume of [http://braininfo.rprc.washington.edu/PrimateBrainMaps/atlas/Mapcorindex.html Macaque's brain] (Bowden et. al. 2003) loaded into \\
[http://www.itksnap.org/pmwiki/pmwiki.php ITK-SNAP] (Yushkevich et. al. (2006).
}}}
{{{#!td valign=top
[http://www.3dbar.org:8080/getPreview?cafDatasetName=aba2011;structureName=CTX,CNU,BS,CB# Reproducing Figure 3]:\\
Models of structures from the Allen Mouse Brain Reference Atlas\\
(http://mouse.brain-map.org/):
 - brain stem,
 - cerebellum,
 - cerebral nuclei,
 - cerebral cortex.
}}}
{{{#!td valign=top
The output from the Custom\\
Reconstruction Wizard according\\
to settings from Figure 4:
 - [http://www.3dbar.org:8080/getReconstructionByKey?id=96571 VRML scene],
 - [http://www.3dbar.org:8080/getReconstructionByKey?id=96570 PNG image],
 - [http://www.3dbar.org:8080/queryJob?id=329 reconstruction job tracking page].
}}}