= 3dBAR reconstruction examples =

{{{Under construction - more examples soon.}}}
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== Based on Paxinos and Watson ''The Rat Brain in Stereotaxic Coordinates'' ==

Examples of reconstructions based on Paxinos and Watson ''The Rat Brain in Stereotaxic Coordinates'' created with 3D Brain Atlas Reconstructor. Meshes are presented without any additional processing such as smoothing or complexity reduction in order to fully represent source data.

|| [[Image(th_0_Brain.gif)]] || [[Image(lab_th_3_Cx.gif)]] ||
||       Reconstruction of the whole brain          || Segmented reconstruction of the cortex\\(both archi and neocortex):\\M1,M2	primary and secondary motor cortex\\RSD - retrosplenial dysgranular cortex\\V1 - primary visual cortex\\!OlfCx - olfactory cortex\\S2 - secondary somatosensory cortex\\S1ULp - primary somatosensory cortex,\\upper lip region.   ||
\\
|| [[Image(th_0_Th.gif)]] || [[Image(lab_th_1_Th.gif)]] ||
||       Thalamus          || Segmented reconstruction of thalamus:\\LD - laterodorsal thalamic nucleus,\\PO - posterior thalamic nuclear group,\\LP - lateral posterior thalamic nucleus,\\DLG - dorsal lateral geniculate nucleus,\\MG - medial geniculate nucleus,\\Rt - reticular thalamic nucleus,\\PVA - paraventricular thalamic nucleus.   ||
\\
|| [[Image(th_0_pyrtr.gif)]] || [[Image(lab_th_1_pyrtr.gif)]] ||
||  Cortico-spinal tract          || Segmented reconstruction\\of cortico-spinal tract:\\ic - internal capsule,\\lfp - longitudinal fasciculus of the pons,\\cp - cerebral penducles,\\py - pyramidal tract. ||
\\

== Based on [http://scalablebrainatlas.incf.org ScalableBrainAtlas] templates ==
||  Rhesus Monkey, Paxinos et al. 2000   ||  !NeuroMaps Macaque Atlas\\([http://www.3dbar.org:8080/getPreview?cafDatasetName=sba_DB08&structureName=OL,PL,FL,TL,Olf,CgG,Amg,Str webGl preview])  ||
|| [[Image(lab_th_sba_PHT00.gif)]] || [[Image(th_sba_DB08.gif)]] ||
||Segmented reconstruction of the cortex:\\6, 47 - areas 6 and 47 of cortex,\\PE - parietal area PE,\\STreg - superior temporal sulcus\\V1,V4 - visual area 1 and 4.  ||Reconstructions of cerebral cortex\\and chosen subcortical structures:\\Amg - amygdala,\\Str - striatum,\\CgG - cingulate gyrus,\\FL,OL,PL - frontal, occipital and\\parietal lobe,\\Olf - olfactory bulb.  ||
\\

== Based on Waxholm Space Atlas ==
||||  ([http://www.3dbar.org:8080/getPreview?cafDatasetName=whs_0.51&structureName=internal-capsule,lateral-ventricles,inferior-colliculus,hippocampal-formation,hypothalamus,globus-pallidus,hindbrain-unsegmented,medulla,midbrain-unsegmented,fornix,pineal-gland,basal-ganglia,anterior-commisure,cerebellum,3rd-ventricle,amygdala,4th-ventricle,thalamus,superior-colliculus,putamen,pons,fimbria,olfactory-bulb webGl preview]) - may take a while to load  ||
|| [[Image(th_screenshot_Brain.gif)]] || [[Image(lab_th_whs_0.51_vol.gif)]] ||
||  Reconstruction of whole brain  ||Segmented reconstructions\\of chosen brain structures:\\SC - superior colliculus,\\VS - ventricular system,\\cb - cerebellum.  ||