Changes between Version 54 and Version 55 of barSoftwareErrorCorrection


Ignore:
Timestamp:
12/20/11 11:30:28 (13 years ago)
Author:
pmajka
Comment:

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  • barSoftwareErrorCorrection

    v54 v55  
    1010'''Left''': Coronal slice of a rat brain around 3 mm behind Bregma stained for Cytochrome Oxidase. Histological verification of the electrodes' location after chronic local field potentials (LFP) recording from the thalamic somatosensory nuclei. '''Middle''': Initial stage of manual preparation of a ''countour slide''. Main structures outlines drawn over the histology slice (line thickness increased for better visibility) and structure labels placed over well recognized regions. '''Right''': Histological slice visible through translucent final CAF slide. 
    1111 
    12 [[Image(wiki:barSoftwareErrorCorrection:006__final_comparison.png)]]  
     12[[Image(wiki:barSoftwareErrorCorrection:006__final_comparison.png,600)]]  
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    5757'''Left''': Red blocks mark regions where irregular neighboring lines touch each other creating small closed areas. '''Middle''': Small areas were detected by the parser, traced and marked as Unlabelled. '''Right''': Adjusting the threshold number of pixels that should be traced by parser excluded incorrectly recognized tiny structures. 
    5858 
    59 [[Image(wiki:barSoftwareErrorCorrection:001__unlabelled_annotated.gif)]] 
     59[[Image(wiki:barSoftwareErrorCorrection:001__unlabelled_annotated.gif,600)]] 
    6060 
    6161=== Duplicated labels within a single contour === 
    … …  
    8383[=#figure3]'''FIGURE 3.''' [[BR]] 
    8484 
    85 [[Image(wiki:barSoftwareErrorCorrection:003__invalid_labels_annotated.gif)]] 
     85[[Image(wiki:barSoftwareErrorCorrection:003__invalid_labels_annotated.gif,400)]] 
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    108108'''Left''': Contour slide containing small holes in contours. '''Middle''': CAF slide without ''gap filling'' enabled. ic,Rt and PoM, Ld pairs of structures are blended together. ZI overtakes the space of hypothalamus while Hb - space of thalamus. '''Right''': Analogous CAF slide with gap filling enabled. Structures are correctly divided. 
    109109 
    110 [[Image(wiki:barSoftwareErrorCorrection:002__gapfill_annotated.gif)]] 
     110[[Image(wiki:barSoftwareErrorCorrection:002__gapfill_annotated.gif,600)]] 
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    137137 - vBrain - compliment of the whole brain outline 
    138138 - ZI - zona incerta 
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