Changes between Version 24 and Version 25 of barSoftwareGUI


Ignore:
Timestamp:
12/19/11 16:58:44 (13 years ago)
Author:
kubel
Comment:

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  • barSoftwareGUI

    v24 v25  
    44To facilitate reconstruction process a simple graphical user interface was prepared. 
    55Below, the 3dBAR reconstruction GUI with an exemplary CAF dataset loaded ([http://www.ncbi.nlm.nih.gov/pubmed/20600960 Johnson et. al., 2010].) 
    6  
    7 [[Image(wiki:barSoftwareGUI:3dbar_interface_strucure_selection.png)]] 
    8  
    9 **Figure 1:** The ''structure selection tab''. The ''Striatum'' selected for reconstruction (gray highlight); ''Amygdala'' and ''Hippocampus'' loaded as context models (red font). The reconstruction of `Hypothalamus` is cached and available for loading (bold font). 
    106 
    117== Selecting structures == 
     
    2319needed. 
    2420 
     21[[Image(wiki:barSoftwareGUI:3dbar_interface_strucure_selection.png)]] 
    2522 
    26 [[Image(wiki:barSoftwareGUI:interface_reconstruction.png)]] 
    27  
    28 **Figure 2:** The ''model customization tab''. Reconstructions of ''Striatum'', ''Amygdala'' and ''Hippocampus'' are presented. 
    29  
     23**Figure 1:** The ''structure selection tab''. The ''Striatum'' selected for reconstruction (gray highlight); ''Amygdala'' and ''Hippocampus'' loaded as context models (red font). The reconstruction of `Hypothalamus` is cached and available for loading (bold font). 
    3024 
    3125== Viewing and customizing the reconstructions == 
    3226 
    3327Reconstructed models can be viewed in the ''Model customization tab'' 
    34 (Fig. 2) which also 
    35 provides access to parameters of VTK pipeline.  The 
     28(Fig. 2) which also provides access to parameters of VTK pipeline.  The 
    3629preview is displayed in the form of triangular mesh although the 
    3730actual model is still stored in volumetric form. 
     
    4235pressing `w` or `s` keys. 
    4336 
     37[[Image(wiki:barSoftwareGUI:interface_reconstruction.png)]] 
     38 
     39**Figure 2:** The ''model customization tab''. Reconstructions of ''Striatum'', ''Amygdala'' and ''Hippocampus'' are presented. 
    4440 
    4541After changing VTK pipeline parameters, mesh may be recalculated by 
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