Changes between Version 4 and Version 5 of barSoftwareGUI

Timestamp:

10/11/11 22:11:50 (13 years ago)

Author:

pmajka

Comment:

--

barSoftwareGUI

@@ -4 +4 @@
 3d Brain Atlas Reconstructor standalone manual
 ==============================================
+
+.. contents:: Contentss
+   :depth: 2
+
 
 ------------------------------------------------
@@ -15 +19 @@
 +------------+------------+ 
 
-The 3dBAR reconstruction GUI with an exemplary CAF dataset loaded
-(`Johnson et. al., 2010 <http://www.ncbi.nlm.nih.gov/pubmed/20600960>`_).
-The *Striatum* selected for reconstruction (gray highlight); and *Hippocampus* loaded as context models (red font). The reconstruction of `Hypothalamus` is cached and available for loading (bold). A) The structure selection tab B) The model customization tab. 
-  
+
+**Figure 1:** The 3dBAR reconstruction GUI with an exemplary CAF dataset loaded (`Johnson et. al., 2010 <http://www.ncbi.nlm.nih.gov/pubmed/20600960>`_). The *Striatum* selected for reconstruction (gray highlight); and *Hippocampus* loaded as context models (red font). The reconstruction of `Hypothalamus` is cached and available for loading (bold). A) The structure selection tab B) The model customization tab.
+
 
 The left panel contains ontology tree loaded from CAF index file.  One
@@ -27 +30 @@
 This includes abbreviated and full name of the structure, span of
 slides on which it is defined as well as color assigned to this
-structure.  Here one can also set the resolution, the depth of
+structure. Here one can also set the resolution, the depth of
 decomposition of the structure into substructures according to
 ontology tree, and mirroring of brain hemisphere may be enabled if
@@ -78 +81 @@
 may be exported into VRML (Virtual Reality Modelling Language) format.
 
+-------------------------------
+|3dBAR| CLI reconstruction tool
+-------------------------------
+
 .. |figA| image:: http://www.3dbar.org/raw-attachment/wiki/barSoftwareManualIndex/3dbar_interface_strucure_selection.png
    :height: 250px
@@ -83 +90 @@
 .. |figB| image:: http://www.3dbar.org/raw-attachment/wiki/barSoftwareManualIndex/interface_reconstruction.png
    :height: 250px
+
+.. |3dBAR| replace:: 3D Brain Atlas Reconstructor
 }}}