Changes between Version 7 and Version 8 of barSoftwareGUI


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Timestamp:
10/12/11 07:40:34 (13 years ago)
Author:
pmajka
Comment:

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  • barSoftwareGUI

    v7 v8  
    77.. contents:: Contents 
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    2019 
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    22 **Figure 1:** The 3dBAR reconstruction GUI with an exemplary CAF dataset loaded (`Johnson et. al., 2010 <http://www.ncbi.nlm.nih.gov/pubmed/20600960>`_). The *Striatum* selected for reconstruction (gray highlight); and *Hippocampus* loaded as context models (red font). The reconstruction of `Hypothalamus` is cached and available for loading (bold). A) The structure selection tab B) The model customization tab. 
     21**Figure 1:** The 3dBAR reconstruction GUI with an exemplary CAF dataset loaded (`Johnson et. al., 2010 <http://www.ncbi.nlm.nih.gov/pubmed/20600960>`_). The *Striatum* selected for reconstruction (gray highlight); and *Hippocampus* loaded as context models (red font). The reconstruction of `Hypothalamus` is cached and available for loading (bold font). A) The structure selection tab B) The model customization tab. 
    2322 
    2423 
    2524The left panel contains ontology tree loaded from CAF index file.  One 
    26 can browse through structures, select them for reconstruction and also 
     25can browse through structures, select them for reconstruction or 
    2726load already reconstructed, cached models.  The right panel contains 
    2827two tabs. *Structure selection* tab displays detailed 
    … …  
    3433ontology tree, and mirroring of brain hemisphere may be enabled if 
    3534needed. 
     35 
    3636 
    3737Reconstructed models can be viewed in the *Model customization tab* 
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    4646pressing `w` or `s` keys. 
    4747 
     48 
    4849After changing VTK pipeline parameters, mesh may be recalculated by 
    4950pressing *Refresh* button and cached by pressing *Save model*. 
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    5758corresponding element in ontology tree is displayed in red. 
    5859 
     60 
    5961Multiple reconstructions can be performed one by one as described 
    6062above.  However, this is convenient only when few models are required. 
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    6264containing desired substructures and reconstruct them down to a 
    6365desired level of detail.  All substructures are generated using the 
    64 same set of reconstruction parameters provided in `Structure selection` 
    65 tab and the same VTK pipeline.  Models are generated one 
     66same set of reconstruction parameters provided in `Structure selection tab` 
     67and the same VTK pipeline.  Models are generated one 
    6668by one and automatically cached. When all the substructures are 
    6769reconstructed they are loaded into preview window as context models. 
     70 
    6871 
    6972By default models are cached in the directory where CAF dataset is 
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    7376and ontology tree updates information about availability of cached 
    7477models from the new directory. 
     78 
    7579 
    76803d Brain Atlas Reconstructor GUI offers three ways of exporting three dimensional 
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