96 | | == Initial build == |
97 | | === Documentation === |
98 | | In order to generate documentation execute: |
99 | | {{{ |
100 | | make doc |
101 | | }}} |
102 | | |
103 | | The documentation for API can be viewed by opening '~/3dbar/doc/api/html/index.html' |
104 | | and the documentation for 3dBAR graphic interface can be viewed by opening |
105 | | '~/3dbar/doc/gui/html/index.html'. |
106 | | |
107 | | === CAF datasets === |
108 | | ==== sba_DB08 ==== |
109 | | In order to generate CAF dataset sba_DB08 execute: |
110 | | {{{ |
111 | | source setbarenv.sh |
112 | | make sba_DB08 |
113 | | }}} |
114 | | |
115 | | Generated dataset can be found in '~/3dbar/atlases/sba_DB08/caf/' directory. |
116 | | |
117 | | ==== sba_PHT00 ==== |
118 | | In order to generate CAF dataset sba_PHT00 execute: |
119 | | {{{ |
120 | | source setbarenv.sh |
121 | | make sba_PHT00 |
122 | | }}} |
123 | | |
124 | | Generated dataset can be found in '~/3dbar/atlases/sba_PHT00/caf/' directory. |
125 | | |
126 | | ==== sba_WHS09 ==== |
127 | | In order to generate CAF dataset sba_WHS09 execute: |
128 | | {{{ |
129 | | source setbarenv.sh |
130 | | make sba_WHS09 |
131 | | }}} |
132 | | |
133 | | Generated dataset can be found in '~/3dbar/atlases/sba_WHS09/caf/' directory. |
134 | | |
135 | | ==== sba_WHS10 ==== |
136 | | In order to generate CAF dataset sba_WHS10 execute: |
137 | | {{{ |
138 | | source setbarenv.sh |
139 | | make sba_WHS10 |
140 | | }}} |
141 | | |
142 | | Generated dataset can be found in '~/3dbar/atlases/sba_WHS10/caf/' directory. |
143 | | |
144 | | ==== sba_RM_on_F99 ==== |
145 | | In order to generate CAF dataset sba_RM_on_F99 execute: |
146 | | {{{ |
147 | | source setbarenv.sh |
148 | | make sba_RM_on_F99 |
149 | | }}} |
150 | | |
151 | | Generated dataset can be found in '~/3dbar/atlases/sba_RM_on_F99/caf/' directory. |
152 | | |
153 | | ==== sba_LPBA40_on_SRI24 ==== |
154 | | In order to generate CAF dataset sba_LPBA40_on_SRI24 execute: |
155 | | {{{ |
156 | | source setbarenv.sh |
157 | | make sba_LPBA40_on_SRI24 |
158 | | }}} |
159 | | |
160 | | Generated dataset can be found in '~/3dbar/atlases/sba_LPBA40_on_SRI24/caf/' directory. |
161 | | |
162 | | ==== whs_0.5 ==== |
163 | | In order to generate CAF dataset whs_0.5 execute: |
164 | | {{{ |
165 | | source setbarenv.sh |
166 | | make whs_0.5 |
167 | | }}} |
168 | | |
169 | | Generated dataset can be found in '~/3dbar/atlases/whs_0.5/caf/' directory. |
170 | | |
171 | | ==== whs_0.51 ==== |
172 | | In order to generate CAF dataset whs_0.51 execute: |
173 | | {{{ |
174 | | source setbarenv.sh |
175 | | make whs_0.51 |
176 | | }}} |
177 | | |
178 | | Generated dataset can be found in '~/3dbar/atlases/whs_0.51/caf/' directory. |
179 | | |
180 | | |
181 | | == Testing the 3dBAR GUI == |
182 | | Once you have a CAF dataset created you can test the GUI for structure creation. |
183 | | To do it in '~/3dbar' directory run: |
184 | | {{{ |
185 | | ./3dbar.sh |
186 | | }}} |
187 | | and choose in the menu //Atlas/Open// and select 'index.xml' file of chosen CAF dataset. |
188 | | |
189 | | To test, click the topmost label on the tree in the left panel and press |
190 | | 'Perform reconstruction' button in the right panel. The reconstruction process |
191 | | will start. When it is finished, choose in the menu //Edit/Save Model//. It allows |
192 | | you to put it later in context by right click on the ontology tree. |
193 | | |
194 | | {{{#!comment |
195 | | == Initial build == |
196 | | In order create initial CAF datasets, generate documentation use following command in /home/$USERNAME/3dbar/ directory: |
197 | | {{{ |
198 | | make -B -j N all |
199 | | }}} |
200 | | |
201 | | where N is number of parallel processes You want to use. If everything is installed correctly processing should be performed without any errors. Then 3dBAR GUI should be launched |
202 | | {{{ |
203 | | ./3dbar.sh |
204 | | }}} |
205 | | and used to perform reconstructions. If everything went fine, You may proceed to : |
206 | | |
207 | | |
208 | | == Getting parsers for additional datasets == |
209 | | }}} |
| 94 | Then [wiki:barSoftwareInitialBuild check ] if the installation was successful. |