= 3d Brain Atlas Reconstructor user guide =

== User guide ==

* [wiki:barSoftwareInstallation Download and installation]
* [wiki:barSoftwareGUI Description of the GUI for the reconstruction module]
* [wiki:barSoftwareCLI Command-line reconstruction interface manual]
* [wiki:barSoftwareExportFormats Supported file formats]
* [wiki:barSoftwareInteroperability Interoperability with other atlasing software]

== Common Atlas Format and its capabilities (WIP) ==
    - Introduction
    - [wiki:barSoftwareErrorCorrection Description of vector data processing - typical problems and their solutions]
    - [wiki:barSoftwareEditingContSl Creation of new structures.]
    - [wiki:barSoftwareGapFillDetails Detailed description of the gap-filling algorithm]