Version 61 (modified by jkowalski, 13 years ago) (diff) |
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3d Brain Atlas Reconstructor on-line service ¶
Available backend services ¶
getAvailableDatasets ¶
Return AJAX data describing CAF datasets (atlases) available to the user in the service. See details.
Example ¶
getCaf ¶
Return zip archive containing requested CAF dataset. See details
Example ¶
getVolume ¶
Return zipped labeled NifTi? volume containing neuroanatomical information from the requested CAF dataset. See details
Example ¶
getCafInfo ¶
Return the index file of selected CAF dataset. Index file contains the list of structures available for reconstruction, their hierarchy and the list of slides within the given dataset. See details.
Examples ¶
- http://service.3dbar.org/getCafInfo?cafDatasetName=whs_0.51
- http://service.3dbar.org/getCafInfo?cafDatasetName=whs_0.51;listSlides=False;listStructures=False
getReconstruction ¶
Return a model of a given structure from selected dataset as a zip file containing the reconstruction and a short description. See details.
Examples ¶
- http://service.3dbar.org/getReconstruction?cafDatasetName=whs_0.51;structureName=thalamus
- http://service.3dbar.org/getReconstruction?cafDatasetName=whs_0.51;structureName=thalamus;qualityPreset=high;outputFormat=vrml
getPreviewReconstruction ¶
Return a lightweight model of a given structure from selected dataset as an x3d mesh. See details.
Examples ¶
- http://service.3dbar.org/getPreviewReconstruction?cafDatasetName=whs_0.51;structureName=thalamus
- http://service.3dbar.org/getPreviewReconstruction?cafDatasetName=sba_DB08;structureName=Br
getThumbnail ¶
Return a thumbnail of the reconstruction of a given structure available via getReconstruction in png format. See details.
Examples ¶
- http://service.3dbar.org/getThumbnail?cafDatasetName=whs_0.51;structureName=corpus-callosum
- http://service.3dbar.org/getThumbnail?cafDatasetName=whs_0.51;structureName=thalamus
- http://service.3dbar.org/getThumbnail?cafDatasetName=whs_0.51;structureName=CNS
- http://service.3dbar.org/getThumbnail?cafDatasetName=sba_DB08;structureName=FL
- http://service.3dbar.org/getThumbnail?cafDatasetName=sba_DB08;structureName=LV
- http://service.3dbar.org/getThumbnail?cafDatasetName=sba_PHT00;structureName=Brain
getCafSlide ¶
Return an SVG image with CAF slide filtered using provided settings. See details.
Examples ¶
- http://service.3dbar.org/getCafSlide?cafDatasetName=whs_0.51;slideNumber=460
- http://service.3dbar.org/getCafSlide?cafDatasetName=whs_0.51;slideNumber=460;showMask=True;showLabels=False
- http://service.3dbar.org/getCafSlide?cafDatasetName=whs_0.51;slideNumber=460;showLabels=False
- http://service.3dbar.org/getCafSlide?cafDatasetName=sba_DB08;slideNumber=84;structureList=Cx
- http://service.3dbar.org/getCafSlide?cafDatasetName=sba_DB08;slideNumber=84;structureList=Cx,Th
queryReconstruction ¶
Return AJAX data describing reconstructions in the service matching the criteria. See details.
Examples ¶
- http://service.3dbar.org/queryReconstruction?cafDatasetName=sba_DB08;structureList=Br;outputFormats=exportToVRML
- http://service.3dbar.org/queryReconstruction?cafDatasetName=whs_0.6.1;structureList=Brain;outputFormats=exportToVRML,exportToX3d;pipeline=whs_0.6.1-LQ;resolution=0.043,0.043
- http://service.3dbar.org/queryReconstruction?cafDatasetName=sba_DB08;structureList=Amg;switches=brainoutline;outputFormats=exportToVRML,exportToX3d,exportScreenshot
getReconstructionByKey ¶
Return reconstruction (stored in the service) of a given service identifier. The identifier can be obtained using 'queryReconstruction' service. See details.
Example ¶
getThumbnailByKey ¶
Return a thumbnail of reconstruction (stored in the service) of a given service identifier in png format. See details.
Example ¶
Availiable frontend services ¶
getPreview ¶
Display a window allowing to manipulate (rotate, zoom, etc.) lightweight version of the reconstuciton. Note that the web browser has to support WebGL in order to use this feature. See details.
Examples ¶
- http://service.3dbar.org/getPreview?cafDatasetName=whs_0.51&structureName=CNS
- http://service.3dbar.org/getPreview?cafDatasetName=whs_0.5&structureName=Hc
- http://service.3dbar.org/getPreview?cafDatasetName=sba_DB08&structureName=FBr
getCafInfoPage ¶
Display a window containing basic information about CAF dataset. See details.
Examples ¶
queryJob ¶
Display a window containing information about a reconstruction job of requested identifier - and about other reconstruction jobs requested for the same CAF dataset. See details.