Supplementary material

Web page http://www.3dbar.org/wiki/barServiceSupplement contains the most recent versions of supplementary materials for the article:

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ABSTRACT

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Following supplementary materials are available:

1. Documentation of the Application Programming Interface (API)
2. Tutorials:
   • How to access the Custom Reconstruction Wizard?
   • How to use labeled volumes available at 3dBAR on-line service website?
3. Screencasts:
   •  A whole playlist:
   •  Selecting an atlas,
   •  Displaying atlas details,
   •  Switching the atlas,
   •  Browsing atlas slides,
   •  3D model preview,
   •  Browsing reconstructed models,
   •  Requesting a custom reconstruction,
   •  Using the user panel,
   •  Other features of 3D model preview,
   •  Requesting a composite custom reconstruction.
4. Troubleshooting

Reproducing results from the article
Figure 2	Figure 3	Figure 4
Reconstructing Figure 2: Labeled volume of  Macaque's brain (Bowden et. al. 2003) loaded into  ITK-SNAP (Yushkevich et. al. (2006).	Reconstructing Figure 3: Models of structures from the Allen Mouse Brain Reference Atlas ( http://mouse.brain-map.org/): brain stem, cerebellum, cerebral nuclei, cerebral cortex.	The output from the Custom Reconstruction Wizard according to settings from Figure 4: VRML scene, PNG image, reconstruction job tracking page.